Basic Information
Locus ID:
BVRB_1g006640
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7385115 | 7388519 | + | BVRB_1g006640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 58,656.64 Da | 29.62 | 76.93 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 182 | 310 | 3.51949E-36 | IPR033734 |
| CDD | cd09612 | Jacalin | 375 | 506 | 1.11769E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 21 | 149 | 3.35457E-44 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 182 | 310 | 4.1E-27 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 20 | 150 | 6.4E-35 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 375 | 506 | 7.2E-30 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 8 | 150 | 3.66E-42 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 170 | 310 | 9.94E-35 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 363 | 505 | 3.92E-40 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 159 | 310 | 6.1E-45 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 6 | 152 | 6.2E-50 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 357 | 506 | 6.3E-50 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 375 | 507 | 1.0E-38 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 182 | 312 | 8.2E-33 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 18 | 150 | 4.6E-42 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 364 | 507 | 48.441509 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 171 | 312 | 41.97924 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 150 | 49.435703 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_048504273.1 | - | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R5P4 | Jacalin-type lectin domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_109120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology