Basic Information
Locus ID:
BVRB_1g006300
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6894528 | 6900467 | + | BVRB_1g006300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 120,280.33 Da | 35.71 | 94.05 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 60 | 93 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 25 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 103 | 138 | 1.3E-5 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 689 | 1072 | 4.1E-159 | IPR010714 |
| Pfam | PF04053 | Coatomer WD associated region | 202 | 630 | 8.3E-130 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 463 | 5.13E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 181 | 1.8E-61 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 502 | 674 | 4.8E-63 | - |
| SMART | SM00320 | WD40_4 | 1 | 25 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 138 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 179 | 310.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 106 | 138 | 11.840134 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 96 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 26 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 103 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 106 | 147 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 26 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 12 | 26 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 12 | 26 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 81 | 95 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 125 | 139 | 3.4E-6 | IPR020472 |
| Coils | Coil | Coil | 980 | 1007 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21390.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_010672358.1 | coatomer subunit alpha-2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SJT9 | Coatomer subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=At2g21390 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKE7 | Coatomer subunit alpha OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology