Basic Information
Locus ID:
BVRB_1g004610
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5016784 | 5023378 | - | BVRB_1g004610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 93,259.11 Da | 56.62 | 81.00 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 761 | 802 | 9.09978E-24 | - |
| CDD | cd01989 | STK_N | 20 | 173 | 8.88032E-46 | - |
| Pfam | PF00069 | Protein kinase domain | 477 | 727 | 7.3E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 757 | 827 | 1.1E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 753 | 828 | 1.06E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 19 | 149 | 3.01E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 447 | 730 | 4.99E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 545 | 744 | 6.3E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 457 | 544 | 7.4E-28 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 19 | 164 | 4.9E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 756 | 829 | 1.5E-28 | IPR013083 |
| SMART | SM00220 | serkin_6 | 472 | 740 | 1.5E-36 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 760 | 823 | 1.4E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 756 | 830 | 34.031174 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 472 | 762 | 34.661526 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 478 | 499 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 590 | 602 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 243 | - | - |
| Coils | Coil | Coil | 416 | 443 | - | - |
| Coils | Coil | Coil | 347 | 408 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670307.2 | U-box domain-containing protein 33 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology