Basic Information
Locus ID:
BVRB_1g004600
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5010403 | 5015128 | - | BVRB_1g004600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 90,408.49 Da | 45.85 | 89.04 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 725 | 766 | 1.42304E-22 | - |
| CDD | cd01989 | STK_N | 4 | 148 | 1.65339E-34 | - |
| Pfam | PF04564 | U-box domain | 721 | 792 | 7.0E-21 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 446 | 692 | 4.0E-33 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 410 | 692 | 2.76E-59 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 3 | 147 | 4.94E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 720 | 791 | 3.71E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 720 | 794 | 3.5E-29 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 508 | 707 | 2.3E-39 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 1 | 149 | 1.4E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 420 | 507 | 1.5E-25 | - |
| SMART | SM00504 | Ubox_2 | 724 | 787 | 1.6E-29 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 435 | 726 | 28.62631 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 720 | 794 | 36.711422 | IPR003613 |
| Coils | Coil | Coil | 260 | 284 | - | - |
| Coils | Coil | Coil | 313 | 357 | - | - |
| Coils | Coil | Coil | 379 | 406 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_048504102.1 | uncharacterized protein LOC104887375 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RIX1 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_061300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology