Basic Information
Locus ID:
BVRB_1g004570
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 4994044 | 5001518 | - | BVRB_1g004570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 81,834.63 Da | 53.44 | 88.17 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 653 | 694 | 4.46008E-22 | - |
| CDD | cd01989 | STK_N | 5 | 158 | 7.38611E-36 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 374 | 619 | 2.4E-40 | IPR001245 |
| Pfam | PF04564 | U-box domain | 649 | 720 | 9.0E-16 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 4 | 138 | 2.18E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 646 | 720 | 2.3E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 346 | 620 | 4.32E-63 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 354 | 441 | 1.7E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 442 | 639 | 1.3E-42 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 4 | 148 | 1.4E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 647 | 722 | 2.8E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 652 | 715 | 8.4E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 648 | 722 | 32.085117 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 369 | 631 | 32.499027 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 375 | 396 | - | IPR017441 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 487 | 499 | - | IPR008266 |
| Coils | Coil | Coil | 217 | 273 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670279.2 | U-box domain-containing protein 33 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RKK8 | Serine/threonine-protein kinase OS=Spinacia oleracea OX=3562 GN=SOVF_061310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology