Basic Information
Locus ID:
BVRB_1g003160
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 3478417 | 3482307 | + | BVRB_1g003160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 42,372.68 Da | 41.23 | 78.73 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 328 | 370 | 4.8912E-15 | - |
| Pfam | PF13639 | Ring finger domain | 327 | 370 | 6.6E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 94 | 2.5E-14 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 156 | 225 | 1.0E-6 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 372 | 3.81E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 374 | 9.5E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 328 | 369 | 2.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 328 | 370 | 12.326995 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46495.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010667464.1 | putative RING-H2 finger protein ATL21A [Beta vulgaris subsp. vulgaris] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9QGR3 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_187580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology