Basic Information
Locus ID:
BVRB_1g001600
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1722575 | 1725439 | + | BVRB_1g001600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 46,477.41 Da | 37.09 | 93.62 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 47 | 3.5E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 263 | 328 | 7.5E-6 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 66 | 9.29E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 15 | 51 | 3.3E-8 | - |
| SMART | SM00256 | fbox_2 | 16 | 55 | 7.6E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 162 | 367 | 6.3E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 10 | 56 | 8.994076 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_010683794.2 | - | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M506 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23251, jg23288, jg37094, jg37095 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1584, gene_1585 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022754 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001600 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg3775, Sbi_jg49024, Sbi_jg49025 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6211 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000697, GOSA_00000698 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl10781, Sgl10782, Sgl16134, Sgl16135 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013327, gene:ENSEOMG00000015097 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0001420, CQ.Regalona.r1.1AG0001450 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30034350 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G01651, Ftri11G32655 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2741 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1349 |
| Plantaginaceae | Plantago ovata | 9 | Pov_00001400, Pov_00021844, Pov_00021845, Pov_00021847 ... |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG19.1356, evm.TU.LG24.1353, evm.TU.LG24.1354 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.495 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9765 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2231 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18080 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.678 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003551 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9609 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18671 |
| Salicaceae | Populus euphratica | 1 | populus_peu16562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610478 |
| Solanaceae | Solanum chilense | 1 | SOLCI004042200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031639 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10190_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2412 |