Basic Information
Locus ID:
BVRB_1g001140
Species & Taxonomic ID:
Beta vulgaris & 3555
Genome Assembly:
GCA_000511025.2
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1288068 | 1293450 | + | BVRB_1g001140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 46,982.85 Da | 75.24 | 75.52 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 217 | 260 | 4.62641E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 6 | 145 | 1.00076E-43 | IPR044744 |
| Pfam | PF02225 | PA domain | 47 | 128 | 1.6E-11 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 217 | 260 | 6.2E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 60 | 148 | 2.62E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 272 | 1.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 265 | 2.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 13 | 143 | 1.7E-27 | - |
| SMART | SM00184 | ring_2 | 218 | 259 | 2.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 218 | 260 | 12.194218 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 328 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_010678889.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M399 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology