Basic Information
Locus ID:
BH09.963
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 17803341 | 17810539 | + | BH09.963 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 75,867.43 Da | 42.91 | 77.42 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 279 | 568 | 1.7E-84 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 273 | 625 | 5.28E-120 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 254 | 637 | 2.3E-136 | IPR037138 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 420 | 435 | 1.2E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 506 | 516 | 1.2E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 388 | 411 | 1.2E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 407 | 423 | 8.0E-57 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 281 | 298 | 8.0E-57 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 314 | 332 | 8.0E-57 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 467 | 480 | 8.0E-57 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 366 | 386 | 8.0E-57 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 484 | 502 | 8.0E-57 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 345 | 362 | 8.0E-57 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 264 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 4.73E-265 |
| RefSeq | XP_025823891.1 | histone deacetylase 9 isoform X1 [Panicum hallii] | 1.9E-309 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 4.54E-264 | |
| TrEMBL | A0A811QRD0 | Histone deacetylase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS44447 PE=3 SV=1 | 1.29E-309 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology