halophFGD

Basic Information

Locus ID: BH09.863

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Short Name: AFB3

Description: F-box-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH09	16490448	16494839	-	BH09.863

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.09	70,563.99 Da	49.93	91.11	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF18511	F-box	1	41	3.8E-17	IPR041567
Pfam	PF18791	Transport inhibitor response 1 protein domain	61	107	4.9E-23	IPR041101
SUPERFAMILY	SSF52047	RNI-like	22	541	1.08E-31	-
Gene3D	G3DSA:1.20.1280.50	-	1	40	3.1E-18	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	41	570	6.8E-164	IPR032675
SMART	SM00256	fbox_2	4	45	0.0076	IPR001810
SMART	SM00367	LRR_CC_2	283	308	480.0	IPR006553
SMART	SM00367	LRR_CC_2	377	401	1.2	IPR006553
SMART	SM00367	LRR_CC_2	437	460	150.0	IPR006553
SMART	SM00367	LRR_CC_2	486	511	130.0	IPR006553
SMART	SM00367	LRR_CC_2	344	376	350.0	IPR006553
SMART	SM00367	LRR_CC_2	124	149	62.0	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G26810.1	auxin signaling F-box 2.	9.18E-277
RefSeq	XP_025824574.1	transport inhibitor response 1-like protein Os04g0395600 [Panicum hallii]	0
Swiss-Prot	Q7XVM8	Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1	0
TrEMBL	A0A678V1B9	Auxin receptor TIR1 OS=Echinochloa crus-galli OX=90397 GN=TIR1 PE=2 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg16093, jg21987, jg24850, jg35232, jg37916, jg38652, jg8855 ... jg40505
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12043, gene_17756, gene_243, gene_6284
Amaranthaceae	Atriplex hortensis	3	Ah005993, Ah012829, Ah017863
Amaranthaceae	Beta vulgaris	3	BVRB_4g082790, BVRB_6g152100, BVRB_8g181550
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg10329, Sbi_jg16886, Sbi_jg42427, Sbi_jg45027 ... Sbi_jg47935, Sbi_jg61417
Amaranthaceae	Salicornia europaea	3	Seu_jg179, Seu_jg22159, Seu_jg27124
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002277, GOSA_00008257, GOSA_00023926
Amaranthaceae	Suaeda glauca	11	Sgl24764, Sgl29910, Sgl31852, Sgl32536, Sgl37130, Sgl37812 ... Sgl45736, Sgl45737, Sgl45744, Sgl50492, Sgl50493
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000228, gene:ENSEOMG00000000503 ... gene:ENSEOMG00000009633, gene:ENSEOMG00000011586, gene:ENSEOMG00000027273, gene:ENSEOMG00000031276, gene:ENSEOMG00000032455, gene:ENSEOMG00000041233, gene:ENSEOMG00000046198
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0009790, CQ.Regalona.r1.4BG0010010 ... CQ.Regalona.r1.6AG0008640, CQ.Regalona.r1.6BG0009330, CQ.Regalona.r1.8AG0003950, CQ.Regalona.r1.8BG0004110
Anacardiaceae	Pistacia vera	3	pistato.v30009940, pistato.v30021110, pistato.v30092700
Apiaceae	Apium graveolens	6	Ag11G03094, Ag2G02546, Ag4G02429, Ag6G00967, Ag7G00671 ... Ag8G00968
Arecaceae	Cocos nucifera	6	COCNU_01G002430, COCNU_02G015540, COCNU_12G001850 ... COCNU_15G005600, contig69407559G000010, scaffold104621G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103708076, gene-LOC103713980, gene-LOC103714767 ... gene-LOC103717830, gene-LOC103718314
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.845.V1.1, AsparagusV1_09.1456.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G25212, Ftri11G31972, Ftri12G27833, Ftri18G09994 ... Ftri9G18197
Brassicaceae	Arabidopsis thaliana	4	AT1G12820.1, AT3G26810.1, AT3G62980.1, AT4G03190.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003903m.g.v1.0, Thhalv10005852m.g.v1.0 ... Thhalv10007195m.g.v1.0, Thhalv10028532m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g11390.v2.2, Sp2g15950.v2.2, Sp5g00540.v2.2 ... Sp6g03220.v2.2
Brassicaceae	Brassica nigra	8	BniB02g007670.2N, BniB03g005390.2N, BniB04g007720.2N ... BniB06g052110.2N, BniB06g061310.2N, BniB08g039010.2N, BniB08g045930.2N, BniB08g076980.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G0756, Ceq04G1477, Ceq06G1611, Ceq08G0056
Casuarinaceae	Casuarina glauca	5	Cgl04G1640, Cgl06G1673, Cgl08G0064, Cgl08G0066, Cgl08G0067
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g13270, gene.Cymno04g05410, gene.Cymno05g04880
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g14820, gene.Thate06g10820, gene.Thate07g03560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10381, nbisL1-mrna-2964
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.273, evm.TU.LG05.84, evm.TU.LG12.1040
Plantaginaceae	Plantago ovata	4	Pov_00005790, Pov_00008210, Pov_00025037, Pov_00038214
Plumbaginaceae	Limonium bicolor	4	Lb1G06892, Lb2G14502, Lb4G22358, Lb5G27979
Poaceae	Echinochloa crus-galli	8	AH04.1381, AH05.993, AH09.869, BH04.1391, BH05.1036 ... BH09.863, CH04.1583, CH09.937
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0319640, gene-QOZ80_4BG0351030 ... gene-QOZ80_5AG0404790, gene-QOZ80_5BG0452910, gene-QOZ80_9AG0687680, gene-QOZ80_9BG0716170
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0022460.1, HORVU.MOREX.r3.2HG0163780.2 ... HORVU.MOREX.r3.5HG0493240.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009663, gene-QYE76_043629
Poaceae	Oryza coarctata	6	Oco07G004360, Oco08G004490, Oco09G002470, Oco10G002490 ... Oco21G006200, Oco22G007280
Poaceae	Oryza sativa	3	LOC_Os04g32460.1, LOC_Os05g05800.1, LOC_Os11g31620.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G151300, gene-BS78_06G074100 ... gene-BS78_09G045900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0302950, Pt_Chr0501438, Pt_Chr0501985, Pt_Chr0502105
Poaceae	Sporobolus alterniflorus	10	Chr07G017260, Chr12G024400, Chr18G001000, Chr22G015120 ... Chr23G014550, Chr25G012380, Chr26G005280, Chr26G006440, Chr30G012020, Chr31G005600
Poaceae	Thinopyrum elongatum	3	Tel1E01G188200, Tel2E01G511200, Tel5E01G447600
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG013050, gene_TRIDC1BG017270 ... gene_TRIDC2AG041450, gene_TRIDC2BG044420, gene_TRIDC5AG042230, gene_TRIDC5BG046090
Poaceae	Triticum aestivum	9	TraesCS1A02G091300.1, TraesCS1B02G119100.1 ... TraesCS1D02G099900.1, TraesCS2A02G286200.1, TraesCS2B02G302900.1, TraesCS2D02G285000.1, TraesCS5A02G281100.1, TraesCS5B02G280100.1, TraesCS5D02G288000.1
Poaceae	Zea mays	4	Zm00001eb085030_P001, Zm00001eb113030_P001 ... Zm00001eb354200_P001, Zm00001eb421340_P001
Poaceae	Zoysia japonica	3	nbis-gene-18179, nbis-gene-44358, nbis-gene-52875
Poaceae	Zoysia macrostachya	4	Zma_g17996, Zma_g21172, Zma_g26441, Zma_g27708
Portulacaceae	Portulaca oleracea	7	evm.TU.LG03.777, evm.TU.LG08.563, evm.TU.LG12.949 ... evm.TU.LG18.1165, evm.TU.LG20.1175, evm.TU.LG20.711, evm.TU.LG22.1595
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g10390, gene.Posoc02g32390
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.229, evm.TU.Scaffold_5_RagTag.910 ... evm.TU.Scaffold_9_RagTag.848
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11437, nbisL1-mrna-14192, nbisL1-mrna-21370
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1627, nbisL1-mrna-3668, nbisL1-mrna-5405
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11529, nbisL1-mrna-14334, nbisL1-mrna-18452
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.561, evm.TU.utg000005l.226 ... evm.TU.utg000006l.252
Rhizophoraceae	Kandelia obovata	3	Maker00009741, Maker00010198, Maker00013649
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10047, nbisL1-mrna-1544, nbisL1-mrna-372
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18984, nbisL1-mrna-5202, nbisL1-mrna-7525
Salicaceae	Populus euphratica	7	populus_peu00806, populus_peu01310, populus_peu10160 ... populus_peu14472, populus_peu18275, populus_peu24341, populus_peu27206
Solanaceae	Lycium barbarum	5	gene-LOC132605614, gene-LOC132608403, gene-LOC132609227 ... gene-LOC132621074, gene-LOC132621841
Solanaceae	Solanum chilense	2	SOLCI001336200, SOLCI006140500
Solanaceae	Solanum pennellii	2	gene-LOC107011102, gene-LOC107031180
Tamaricaceae	Reaumuria soongarica	5	STRG.13959_chr05_-, STRG.22146_chr09_-, STRG.24388_chr08_- ... STRG.29472_chr10_-, STRG.32027_chr09_+
Tamaricaceae	Tamarix chinensis	5	TC01G3412, TC03G1138, TC05G2410, TC06G0813, TC07G2289
Zosteraceae	Zostera marina	2	Zosma01g13700.v3.1, Zosma02g25510.v3.1