Basic Information
Locus ID:
BH09.806
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 15634198 | 15635560 | - | BH09.806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 40,633.67 Da | 53.41 | 76.10 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 327 | 367 | 2.4E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 117 | 234 | 3.27E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 53 | 105 | 2.83E-5 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 327 | 372 | 3.27E-10 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 38 | 251 | 4.7E-15 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 312 | 372 | 4.6E-11 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 325 | 367 | 10.95451 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 2.13E-117 |
| RefSeq | XP_034602327.1 | F-box protein At5g50450-like [Setaria viridis] | 1.18E-192 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 2.05E-116 | |
| TrEMBL | A0A2T7CTZ6 | MYND-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G112300 PE=4 SV=1 | 1.79E-192 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology