Basic Information
Locus ID:
BH09.723
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 14640241 | 14643731 | - | BH09.723 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.77 | 76,003.48 Da | 57.13 | 80.48 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 308 | 379 | 2.0E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 396 | 583 | 1.02E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 306 | 381 | 3.27E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 296 | 386 | 2.2E-20 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 397 | 593 | 5.2E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 311 | 374 | 1.5E-19 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 307 | 381 | 28.352234 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18320.1 | ARM repeat superfamily protein. | 2.77E-27 |
| RefSeq | XP_034604670.1 | uncharacterized protein LOC117864661 [Setaria viridis] | 0 |
| Q3E9F7 | Putative U-box domain-containing protein 46 OS=Arabidopsis thaliana OX=3702 GN=PUB46 PE=3 SV=1 | 2.73E-26 | |
| TrEMBL | A0A4U6U1D6 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_7G070700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH06.2661, AH09.704, BH05.2377, BH09.723, CH07.956, CH09.778 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0321360, gene-QOZ80_4BG0357080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0160850.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043508 |
| Poaceae | Oryza coarctata | 1 | Oco07G003540 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g30470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G057300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303088, Pt_Chr0303106 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015350, Chr26G004500 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G499700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG040240, gene_TRIDC2BG043280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G278300.1, TraesCS2B02G295900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb420580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44969 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19519 |