Basic Information
Locus ID:
BH09.493
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 10297935 | 10311968 | + | BH09.493 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 167,258.14 Da | 47.30 | 72.26 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1054 | 1303 | 6.70844E-53 | - |
| CDD | cd10508 | Zn-ribbon_RPB9 | 1415 | 1464 | 2.80317E-24 | IPR034012 |
| CDD | cd09076 | L1-EN | 572 | 779 | 2.56878E-28 | - |
| Pfam | PF01096 | Transcription factor S-II (TFIIS) | 1426 | 1464 | 7.8E-10 | IPR001222 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1064 | 1301 | 9.1E-42 | IPR000477 |
| Pfam | PF02150 | RNA polymerases M/15 Kd subunit | 1355 | 1384 | 9.8E-9 | IPR001529 |
| SUPERFAMILY | SSF56219 | DNase I-like | 583 | 766 | 1.8E-13 | IPR036691 |
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | 1352 | 1399 | 3.23E-16 | - |
| SUPERFAMILY | SSF57783 | Zinc beta-ribbon | 1403 | 1465 | 2.61E-15 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 986 | 1281 | 3.18E-21 | IPR043502 |
| Gene3D | G3DSA:2.20.25.10 | - | 1398 | 1465 | 3.8E-27 | - |
| Gene3D | G3DSA:2.20.25.10 | - | 1352 | 1397 | 9.5E-23 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 567 | 780 | 3.8E-23 | IPR036691 |
| Gene3D | G3DSA:3.30.70.270 | - | 1099 | 1276 | 5.9E-8 | IPR043128 |
| SMART | SM00440 | Cys4_2 | 1425 | 1465 | 9.3E-9 | IPR001222 |
| SMART | SM00661 | rpol9cneu | 1356 | 1409 | 5.9E-13 | IPR001529 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1041 | 1303 | 23.101923 | IPR000477 |
| ProSiteProfiles | PS51133 | Zinc finger TFIIS-type profile. | 1423 | 1464 | 12.933797 | IPR001222 |
| ProSitePatterns | PS01030 | RNA polymerases M / 15 Kd subunits signature. | 1357 | 1383 | - | IPR019761 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 411 | - | - |
| Coils | Coil | Coil | 880 | 900 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16980.1 | RNA polymerases M/15 Kd subunit. One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 | 4.4E-64 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 1.6800000713614E-317 |
| Q6NLH0 | DNA-directed RNA polymerases II, IV and V subunit 9A OS=Arabidopsis thaliana OX=3702 GN=NRPB9A PE=1 SV=1 | 4.24E-63 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |