Basic Information
Locus ID:
BH09.443
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 9061027 | 9071833 | - | BH09.443 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 169,524.34 Da | 42.70 | 88.99 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1145 | 1556 | 1.50359E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1193 | 1561 | 2.4E-80 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1137 | 1554 | 5.49E-98 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 3 | 325 | 9.49E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1443 | 1559 | 2.1E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 167 | 5.0E-15 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1085 | 1330 | 4.0E-45 | - |
| SMART | SM00119 | hect_3 | 1159 | 1561 | 2.6E-88 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1169 | 1561 | 57.3894 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 759 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_012703143.1 | E3 ubiquitin-protein ligase UPL3 [Setaria italica] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | K3Y4M6 | HECT-type E3 ubiquitin transferase OS=Setaria italica OX=4555 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology