Basic Information
Locus ID:
BH09.442
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 9022145 | 9039338 | - | BH09.442 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 31,871.54 Da | 43.29 | 81.35 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 9 | 152 | 6.525E-43 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 228 | 282 | 1.11408E-16 | - |
| Pfam | PF02225 | PA domain | 77 | 139 | 8.3E-10 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 227 | 282 | 1.3E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 212 | 286 | 1.5E-11 | - |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 146 | 1.14E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 20 | 158 | 4.4E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 286 | 2.2E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 282 | 10.586141 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 5.06E-59 |
| RefSeq | XP_004975098.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Setaria italica] | 6.82E-176 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 8.62E-58 | |
| TrEMBL | K3Y968 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101758717 PE=4 SV=1 | 1.54E-174 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology