Basic Information
Locus ID:
BH09.36
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 899502 | 902484 | + | BH09.36 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 87,929.32 Da | 57.28 | 83.25 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04195 | Putative gypsy type transposon | 51 | 118 | 2.6E-23 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 395 | - | - |
| Coils | Coil | Coil | 569 | 635 | - | - |
| Coils | Coil | Coil | 678 | 698 | - | - |
| Coils | Coil | Coil | 650 | 670 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034575517.1 | uncharacterized protein LOC117839325 [Setaria viridis] | 2.8E-55 |
| TrEMBL | A0A8T0QA42 | Retrotransposon protein OS=Panicum virgatum OX=38727 GN=PVAP13_7KG057036 PE=4 SV=1 | 1.05E-67 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||