Basic Information
Locus ID:
BH09.2806
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Cupin superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 34499628 | 34516006 | - | BH09.2806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 245,830.08 Da | 49.23 | 79.94 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 687 | 933 | 1.39044E-90 | IPR001932 |
| CDD | cd00121 | MATH | 29 | 157 | 1.83413E-13 | IPR002083 |
| CDD | cd00121 | MATH | 217 | 347 | 2.93285E-12 | IPR002083 |
| Pfam | PF00481 | Protein phosphatase 2C | 717 | 926 | 2.0E-64 | IPR001932 |
| Pfam | PF08007 | Cupin superfamily protein | 1435 | 1535 | 5.8E-19 | IPR003347 |
| Pfam | PF03951 | Glutamine synthetase, beta-Grasp domain | 1888 | 1963 | 2.9E-10 | IPR008147 |
| Pfam | PF00651 | BTB/POZ domain | 381 | 494 | 6.3E-16 | IPR000210 |
| Pfam | PF00120 | Glutamine synthetase, catalytic domain | 1991 | 2120 | 3.5E-10 | IPR008146 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1033 | 1702 | 4.39E-8 | IPR016024 |
| SUPERFAMILY | SSF54368 | Glutamine synthetase, N-terminal domain | 1884 | 1968 | 2.62E-18 | IPR036651 |
| SUPERFAMILY | SSF55931 | Glutamine synthetase/guanido kinase | 1970 | 2218 | 8.63E-66 | IPR014746 |
| SUPERFAMILY | SSF81606 | PP2C-like | 682 | 933 | 3.66E-76 | IPR036457 |
| SUPERFAMILY | SSF54695 | POZ domain | 368 | 493 | 2.04E-17 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 214 | 353 | 5.56E-17 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1391 | 1546 | 2.2E-25 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 23 | 163 | 1.01E-16 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 215 | 353 | 6.1E-15 | IPR008974 |
| Gene3D | G3DSA:3.10.20.70 | - | 1867 | 1969 | 1.1E-41 | IPR036651 |
| Gene3D | G3DSA:3.30.590.10 | Glutamine synthetase/guanido kinase, catalytic domain | 1970 | 2222 | 2.1E-97 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 25 | 160 | 4.6E-13 | IPR008974 |
| Gene3D | G3DSA:3.60.40.10 | - | 680 | 937 | 5.3E-86 | IPR036457 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1338 | 1540 | 1.2E-36 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 361 | 525 | 9.4E-31 | IPR011333 |
| SMART | SM00332 | PP2C_4 | 678 | 931 | 3.4E-95 | IPR001932 |
| SMART | SM01230 | Gln_synt_C_2 | 1969 | 2217 | 8.9E-58 | IPR008146 |
| SMART | SM00225 | BTB_4 | 388 | 496 | 2.8E-13 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 216 | 349 | 14.254262 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 388 | 460 | 13.239526 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 25 | 163 | 17.066906 | IPR002083 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1406 | 1555 | 17.831072 | IPR003347 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 688 | 933 | 54.771488 | IPR001932 |
| ProSitePatterns | PS01032 | PPM-type phosphatase domain signature. | 719 | 727 | - | IPR000222 |
| ProSitePatterns | PS00181 | Glutamine synthetase putative ATP-binding region signature. | 2103 | 2119 | - | IPR027303 |
| ProSitePatterns | PS00180 | Glutamine synthetase signature 1. | 1921 | 1938 | - | IPR027302 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1744 | 1770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 962 | 995 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1744 | 1764 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35630.1 | glutamine synthetase 2. chloroplastic glutamine synthetase | 1.06E-232 |
| RefSeq | XP_004963393.1 | uncharacterized protein LOC101785360 [Setaria italica] | 0 |
| P14655 | Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=GLN2 PE=1 SV=1 | 8.92E-278 | |
| TrEMBL | A0A0D9WAM5 | Glutamine synthetase OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33161 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11116 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g190100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25273, Sbi_jg9125 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19470 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011220 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl43043, Sgl43044, Sgl43051, Sgl47863 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044437 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0014390 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30262610 |
| Apiaceae | Apium graveolens | 2 | Ag2G02681, Ag2G02682 |
| Arecaceae | Cocos nucifera | 1 | contig69644988G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715626 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.653.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G32488 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2040 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2231 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06440 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0046s00021.v1.0, Dusal.2808s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.540 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31987, Lb6G31988 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2582, BH09.2806, CH09.3005 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0331590 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0202340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047058 |
| Poaceae | Oryza coarctata | 2 | Oco07G018070, Oco08G017430 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56405.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G267400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G001940, Chr26G017380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G845700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG070390, gene_TRIDC2BG076080 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G500300.1, TraesCS2B02G528200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb432590_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6086 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22139 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.1555, evm.TU.LG22.448, evm.TU.LG22.449 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g15040, gene.Posoc03g15050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1999 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25508 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15038 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4774 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1159 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001398 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21002 |
| Salicaceae | Populus euphratica | 3 | populus_peu05791, populus_peu11162, populus_peu11163 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12508 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0444 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00200.v3.1 |