Basic Information
Locus ID:
BH09.2711
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 33603393 | 33607836 | + | BH09.2711 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 65,304.98 Da | 34.31 | 97.75 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 367 | 1.34614E-27 | - |
| CDD | cd00030 | C2 | 445 | 534 | 1.80505E-24 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 249 | 2.9E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 367 | 1.7E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 443 | 544 | 3.6E-27 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 392 | 6.83E-32 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 441 | 562 | 2.42E-33 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 428 | 561 | 1.4E-37 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 260 | 400 | 1.5E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 444 | 542 | 4.1E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 264 | 364 | 5.8E-24 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 250 | 28.233908 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 244 | 365 | 22.125296 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 426 | 543 | 22.338346 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 508 | 516 | 6.6E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 460 | 472 | 6.6E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 499 | 6.6E-8 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 1.88E-287 |
| RefSeq | XP_034605280.1 | synaptotagmin-5-like [Setaria viridis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 1.81E-286 | |
| TrEMBL | A0A4U6TVS1 | Synaptotagmin-5-like OS=Setaria viridis OX=4556 GN=SEVIR_7G272700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology