halophFGD

Basic Information

Locus ID: BH09.2589

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: SNF2 family N-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH09	32641888	32654385	-	BH09.2589

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	188,729.56 Da	46.33	79.43	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18793	SF2_C_SNF	1508	1635	1.48144E-46	-
CDD	cd18793	SF2_C_SNF	720	862	5.49176E-53	-
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	632	676	2.2E-6	-
Pfam	PF00176	SNF2 family N-terminal domain	1335	1431	2.0E-11	IPR000330
Pfam	PF00271	Helicase conserved C-terminal domain	1564	1625	9.4E-6	IPR001650
Pfam	PF00271	Helicase conserved C-terminal domain	756	852	1.3E-13	IPR001650
Pfam	PF00176	SNF2 family N-terminal domain	1138	1266	1.5E-9	IPR000330
Pfam	PF00176	SNF2 family N-terminal domain	270	456	7.6E-24	IPR000330
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	213	457	5.32E-19	IPR027417
SUPERFAMILY	SSF57850	RING/U-box	631	683	6.73E-11	-
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	1394	1683	7.97E-41	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	525	910	1.09E-57	IPR027417
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	1119	1392	4.5E-7	IPR027417
Gene3D	G3DSA:3.40.50.10810	-	1094	1274	2.7E-11	IPR038718
Gene3D	G3DSA:3.40.50.10810	-	229	321	5.9E-10	IPR038718
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	615	684	4.6E-11	IPR013083
Gene3D	G3DSA:3.40.50.300	-	1401	1684	3.4E-48	IPR027417
Gene3D	G3DSA:3.40.50.10810	-	376	472	1.4E-10	IPR038718
Gene3D	G3DSA:3.40.50.300	-	532	912	2.7E-62	IPR027417
SMART	SM00490	helicmild6	1555	1625	9.0E-6	IPR001650
SMART	SM00490	helicmild6	769	852	3.9E-17	IPR001650
SMART	SM00487	ultradead3	253	646	9.9E-7	IPR014001
SMART	SM00184	ring_2	1427	1467	7.9	IPR001841
SMART	SM00184	ring_2	633	671	0.0013	IPR001841
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	748	905	14.163809	IPR001650
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	1527	1679	10.055804	IPR001650
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	633	669	10.895954	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	1443	1452	-	IPR017907
ProSitePatterns	PS00518	Zinc finger RING-type signature.	648	657	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	371	385	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1038	1054	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	371	392	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1032	1070	-	-

Gene Ontology

Molecular Function:

GO:0005524 (ATP binding) GO:0140658 (ATP-dependent chromatin remodeler activity)

KEGG Pathway

KO Term:

K15083 (DNA repair protein RAD16)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G50410.1	SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related.	1.53E-184
RefSeq	XP_039774114.1	helicase-like transcription factor CHR28 isoform X1 [Panicum virgatum]	0
Swiss-Prot	Q94BR5	Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1	1.48E-183
TrEMBL	A0A3L6PXE4	Putative ATP-dependent helicase C17A2.12-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G20830 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	AH09.2381, BH09.2589, CH09.2819