Basic Information
Locus ID:
BH09.2588
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 32639699 | 32641156 | - | BH09.2588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.32 | 54,695.60 Da | 56.47 | 70.31 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 419 | 454 | 2.5E-5 | IPR005174 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 53 | 3.9E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 339 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024311853.1 | uncharacterized protein LOC112269395 [Brachypodium distachyon] | 6.1E-71 |
| TrEMBL | A0A1E5WA59 | F-box domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004851 PE=4 SV=1 | 3.73E-187 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH08.53, BH01.1445, BH01.1446, BH03.3228, BH03.3764 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0365330, gene-QOZ80_5AG0365340 ... |
| Poaceae | Hordeum vulgare | 10 | HORVU.MOREX.r3.1HG0079390.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 29 | gene-QYE76_000935, gene-QYE76_006121, gene-QYE76_016699 ... |
| Poaceae | Oryza coarctata | 1 | Oco13G007960 |
| Poaceae | Oryza sativa | 3 | LOC_Os07g31560.1, LOC_Os07g31680.1, LOC_Os07g31710.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_07G006600, gene-BS78_07G006800, gene-BS78_K327000 ... |
| Poaceae | Puccinellia tenuiflora | 19 | Pt_Chr0100823, Pt_Chr0101034, Pt_Chr0103633, Pt_Chr0106038 ... |
| Poaceae | Thinopyrum elongatum | 13 | Tel1E01G598100, Tel1E01G598400, Tel1E01G598500 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG015010, gene_TRIDC5AG006330 |
| Poaceae | Triticum aestivum | 49 | TraesCS1A02G367400.1.cds1, TraesCS1A02G442900.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb259990_P001, Zm00001eb260250_P001 |