Basic Information
Locus ID:
BH09.2266
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 30023683 | 30025319 | + | BH09.2266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 56,676.61 Da | 53.84 | 85.44 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 48 | 205 | 2.87986E-21 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 245 | 3.0E-48 | IPR007012 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 244 | 333 | 2.6E-25 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 120 | 2.4E-6 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 337 | 396 | 6.1E-10 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 336 | 474 | 1.43E-27 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 206 | 334 | 7.85E-42 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 12 | 204 | 9.4E-41 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 336 | 464 | 1.9E-21 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 177 | 333 | 5.3E-53 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 42 | 166 | 1.3E-8 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 520 | 4.9E-149 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 433 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 7.75E-159 |
| RefSeq | XP_012702940.2 | nuclear poly(A) polymerase 4 [Setaria italica] | 3.58E-283 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 1.57E-157 | |
| TrEMBL | K3YCS9 | Poly(A) polymerase OS=Setaria italica OX=4555 PE=3 SV=1 | 3.79E-284 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology