Basic Information
Locus ID:
BH09.2229
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 29642303 | 29651705 | + | BH09.2229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 151,244.69 Da | 59.79 | 77.86 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 610 | 652 | 2.4582E-16 | - |
| Pfam | PF04564 | U-box domain | 606 | 677 | 1.0E-11 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 763 | 1091 | 1.62E-6 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 602 | 676 | 6.48E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 605 | 679 | 2.7E-20 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 609 | 673 | 4.0E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 605 | 680 | 32.421257 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1258 | 1344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1366 | 1400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1152 | 1179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1182 | 1196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1152 | 1234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1210 | 1227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 226 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49780.1 | plant U-box 26. | 4.14E-11 |
| RefSeq | XP_034602632.1 | putative E3 ubiquitin-protein ligase LIN [Setaria viridis] | 0 |
| C6L7U1 | Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus OX=34305 GN=CERBERUS PE=2 SV=2 | 2.59E-18 | |
| TrEMBL | A0A4U6TY61 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_7G224900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35519, jg35520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30054080 |
| Apiaceae | Apium graveolens | 1 | Ag9G01406 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.409.V1.1, AsparagusV1_04.410.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G23193 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2151 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2242 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.484 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015076 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2074, BH09.2229, CH09.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306240, gene-QOZ80_4BG0337220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0196090.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_045812 |
| Poaceae | Oryza coarctata | 1 | Oco07G014120 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G199400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301611, Pt_Chr0306600 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G005580, Chr25G004660, Chr26G013970, Chr30G004520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G773400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065120, gene_TRIDC2BG069510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G456200.2, TraesCS2B02G478300.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb054320_P001, Zm00001eb072830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22666, nbis-gene-5664 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20309, Zma_g21852 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1715, evm.TU.Scaffold_8_RagTag.68 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10286, nbisL1-mrna-19809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6372 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22638 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000002l.17, add.evm.TU.utg000002l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011815 |
| Salicaceae | Populus euphratica | 2 | populus_peu04395, populus_peu35220 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626006 |
| Solanaceae | Solanum chilense | 1 | SOLCI006667300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026658 |