Basic Information
Locus ID:
BH09.2202
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function DUF223
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 29336387 | 29341876 | - | BH09.2202 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 74,161.31 Da | 50.01 | 77.39 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04481 | RPA1_DBD_B_like | 138 | 243 | 7.75758E-10 | - |
| CDD | cd04480 | RPA1_DBD_A_like | 18 | 103 | 1.04204E-24 | - |
| Pfam | PF16900 | Replication protein A OB domain | 135 | 228 | 2.7E-7 | IPR031657 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 41 | 111 | 1.2E-8 | IPR003871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 135 | 245 | 2.78E-12 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 3 | 111 | 1.75E-18 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 267 | 330 | 2.91E-10 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 255 | 351 | 4.2E-10 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 112 | 247 | 1.5E-19 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 3 | 108 | 3.2E-23 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 650 | - | - |
| Coils | Coil | Coil | 481 | 501 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039789813.1 | replication protein A 70 kDa DNA-binding subunit B-like [Panicum virgatum] | 1.69E-175 |
| TrEMBL | A0A8T0PZ28 | Replication protein A 70 kDa DNA-binding subunit OS=Panicum virgatum OX=38727 GN=PVAP13_7NG171700 PE=3 SV=1 | 8.9E-193 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology