Basic Information
Locus ID:
BH09.1925
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 26586797 | 26599992 | - | BH09.1925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.23 | 154,677.77 Da | 61.02 | 64.73 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07607 | BAR_SH3P_plant | 417 | 626 | 6.55505E-114 | - |
| SUPERFAMILY | SSF50044 | SH3-domain | 637 | 713 | 2.23E-6 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 415 | 627 | 4.6E-25 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 414 | 636 | 6.4E-12 | IPR027267 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 1008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 907 | 931 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1397 | 1424 | - | - |
| Coils | Coil | Coil | 613 | 633 | - | - |
| Coils | Coil | Coil | 518 | 545 | - | - |
| Coils | Coil | Coil | 562 | 582 | - | - |
| Coils | Coil | Coil | 589 | 609 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 4.4E-138 |
| RefSeq | XP_004976396.1 | SH3 domain-containing protein 2 [Setaria italica] | 2.7E-208 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 4.22E-137 | |
| TrEMBL | K3Y867 | SH3 domain-containing protein OS=Setaria italica OX=4555 GN=101779661 PE=4 SV=1 | 6.12E-207 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 23 | AH03.1339, AH04.1181, AH05.1634, AH05.2682, AH05.3161 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G029890 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g25690.1 |