Basic Information
Locus ID:
BH09.1858
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 26093784 | 26102289 | + | BH09.1858 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 104,862.17 Da | 50.75 | 76.61 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 251 | 361 | 7.7E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 826 | 885 | 1.2E-4 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 824 | 897 | 4.63E-13 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 699 | 760 | 8.43E-11 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 387 | 2.47E-20 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 822 | 893 | 1.5E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 391 | 1.7E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 697 | 761 | 4.4E-7 | - |
| SMART | SM00577 | forpap2 | 195 | 370 | 6.3E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 697 | 761 | 0.0023 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 823 | 889 | 2.8E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 822 | 890 | 10.096106 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 725 | 762 | 10.872946 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 386 | 16.795328 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 685 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 4.53E-298 |
| RefSeq | XP_039774792.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Panicum virgatum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 4.35E-297 | |
| TrEMBL | A0A8T0QJ95 | protein-serine/threonine phosphatase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG258800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology