HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: BH09.185
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: terpene synthase activity
Maps and Mapping Data
Chromosome Start End Strand ID
BH09 3713114 3714092 + BH09.185
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.82 25,853.04 Da 46.67 79.41 -0.14
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF01397 Terpene synthase, N-terminal domain 78 171 5.0E-17 IPR001906
SUPERFAMILY SSF48239 Terpenoid cyclases/Protein prenyltransferases 75 172 8.63E-18 IPR008930
Gene3D G3DSA:1.50.10.130 - 70 221 2.6E-18 IPR036965
Gene Ontology
Molecular Function:
GO:0010333 (terpene synthase activity) GO:0016829 (lyase activity)
KEGG Pathway
KO Term:
K14184 (alpha-humulene/beta-caryophyllene synthase [EC:4.2.3.104 4.2.3.57])
Pathway:
ko00909 (Sesquiterpenoid and triterpenoid biosynthesis) map00909 (Sesquiterpenoid and triterpenoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)
Reaction:
R08373 (trans,trans-Farnesyl diphosphate <=> Humulene + Diphosphate) R08541 (trans,trans-Farnesyl diphosphate <=> beta-Caryophyllene + Diphosphate)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_004975013.1 alpha-humulene synthase [Setaria italica] 9.82E-60
Swiss-Prot A0A3L6G2C1 Eudesmanediol synthase OS=Zea mays OX=4577 GN=EDS PE=3 SV=1 6.2E-33
TrEMBL A0A368RQR3 Terpene synthase TPS25 OS=Setaria italica OX=4555 GN=SETIT_7G013300v2 PE=2 SV=1 2.22E-58
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 28 AH02.1637, AH02.3407, AH04.1021, AH04.1940, AH06.1327 ...
AH06.1908, AH06.2307, AH08.1711, AH08.795, BH02.2325, BH04.1838, BH04.2023, BH04.2346, BH04.82, BH05.2507, BH05.3727, BH09.185, BH09.477, BH09.479, CH02.1733, CH03.4794, CH04.1028, CH04.1436, CH04.44, CH05.3459, CH06.1596, CH09.2360, CH09.521
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.