halophFGD

Basic Information

Locus ID: BH09.1534

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH09	23383767	23387517	+	BH09.1534

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.82	69,622.97 Da	59.41	84.57	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	290	333	5.89E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	282	347	2.4E-5	-
ProSiteProfiles	PS50181	F-box domain profile.	291	338	9.894885	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT4G13960.1	F-box/RNI-like superfamily protein.	9.0E-8
RefSeq	XP_002446938.1	F-box/FBD/LRR-repeat protein At5g22660 [Sorghum bicolor]	1.36E-64
Swiss-Prot	O23257	Putative F-box/LRR-repeat protein At4g13960 OS=Arabidopsis thaliana OX=3702 GN=At4g13960 PE=4 SV=1	3.64E-7
TrEMBL	A0A2T7DRK0	F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G491500 PE=4 SV=1	3.19E-136

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	BH09.1534, CH09.1649
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_4AG0312640