Basic Information
Locus ID:
BH09.1392
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 22180327 | 22185378 | + | BH09.1392 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 126,932.68 Da | 42.41 | 85.30 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 17 | 96 | 1.43959E-5 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 384 | 963 | 3.9E-174 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 9 | 101 | 1.76E-7 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 11 | 101 | 7.5E-7 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 16 | 96 | 5.0E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 15 | 100 | 10.240801 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_025822788.1 | probable RNA-dependent RNA polymerase 2 [Panicum hallii] | 0 |
| Q7XM31 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3I7F5 | RNA-dependent RNA polymerase OS=Panicum hallii OX=206008 GN=PAHAL_7G182400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology