Basic Information
Locus ID:
BH09.1303
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 21401154 | 21418335 | - | BH09.1303 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 264,743.63 Da | 51.69 | 70.80 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1197 | 1303 | 6.8E-38 | IPR025452 |
| Pfam | PF13963 | Transposase-associated domain | 483 | 556 | 4.8E-18 | IPR029480 |
| Pfam | PF02992 | Transposase family tnp2 | 800 | 1013 | 3.9E-91 | IPR004242 |
| Pfam | PF03106 | WRKY DNA -binding domain | 75 | 135 | 2.3E-20 | IPR003657 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1457 | 1522 | 9.8E-13 | IPR025312 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 66 | 136 | 3.4E-19 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 60 | 138 | 7.4E-19 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 73 | 136 | 1.2E-28 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 75 | 137 | 16.01907 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1720 | 1734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1944 | 1964 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1524 | 1545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1700 | 1749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2285 | 2308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 593 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1942 | 1974 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01900.1 | WRKY DNA-binding protein 62. member of WRKY Transcription Factor; Group III | 7.8E-16 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9LZV6 | Probable WRKY transcription factor 62 OS=Arabidopsis thaliana OX=3702 GN=WRKY62 PE=1 SV=2 | 7.62E-15 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |