Basic Information
Locus ID:
BH09.1276
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 21149356 | 21150516 | + | BH09.1276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 40,841.33 Da | 71.88 | 66.55 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 128 | 171 | 2.74514E-17 | - |
| Pfam | PF13639 | Ring finger domain | 128 | 171 | 5.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 178 | 2.19E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 177 | 9.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 170 | 9.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 171 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 386 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 227 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 1.17E-35 |
| RefSeq | XP_025823152.1 | E3 ubiquitin-protein ligase ATL6-like [Panicum hallii] | 2.31E-170 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 1.15E-34 | |
| TrEMBL | A0A2T7CVP3 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G162000 PE=4 SV=1 | 2.59E-169 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.2289, AH09.1175, BH06.2110, BH09.1276, CH07.2181 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0315720, gene-QOZ80_4BG0346710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0172140.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013370, gene-QYE76_024068, gene-QYE76_044350 |
| Poaceae | Oryza coarctata | 4 | Oco03G013260, Oco04G013140, Oco07G007180, Oco08G007090 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g36300.1, LOC_Os04g37730.1, LOC_Os12g10450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G115100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302550, Pt_Chr0504746 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G011920, Chr25G007850, Chr26G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G559300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG046230, gene_TRIDC2BG049170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G318200.1.cds1, TraesCS2B02G336300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb081330_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18749, nbis-gene-27038, nbis-gene-37715 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19798 |