Basic Information
Locus ID:
BH09.1199
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 20621614 | 20622552 | + | BH09.1199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 31,654.99 Da | 58.01 | 76.41 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 122 | 165 | 1.25404E-21 | - |
| Pfam | PF13639 | Ring finger domain | 122 | 165 | 6.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 173 | 9.79E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 171 | 1.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 123 | 164 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 165 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 89 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 8.99E-26 |
| RefSeq | XP_039775512.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 1.38E-101 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 1.58E-31 | |
| TrEMBL | A0A1E5VJJ9 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013684 PE=4 SV=1 | 1.34E-115 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology