halophFGD

Basic Information

Locus ID: BH09.1174

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH09	20321501	20323559	-	BH09.1174

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	73,365.96 Da	38.76	78.87	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF10551	MULE transposase domain	394	487	6.5E-18	IPR018289
Pfam	PF03108	MuDR family transposase	197	260	1.6E-13	IPR004332
ProSitePatterns	PS01007	Transposases, Mutator family, signature.	459	483	-	IPR001207
Coils	Coil	Coil	142	162	-	-

Gene Ontology

Biological Process:

GO:0006313 (DNA transposition)

Molecular Function:

GO:0003677 (DNA binding) GO:0004803 (transposase activity)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_042008115.1	uncharacterized protein LOC121756789 [Salvia splendens]	1.36E-264
TrEMBL	Q2QXK8	Transposon protein, putative, Mutator sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g05700 PE=4 SV=2	1.04E-266

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	3	AH02.3022, BH09.1174, CH01.3035
Poaceae	Lolium multiflorum	19	gene-QYE76_001585, gene-QYE76_001690, gene-QYE76_005059 ... gene-QYE76_006563, gene-QYE76_009163, gene-QYE76_009482, gene-QYE76_011325, gene-QYE76_013512, gene-QYE76_013713, gene-QYE76_014408, gene-QYE76_020185, gene-QYE76_020571, gene-QYE76_027308, gene-QYE76_028483, gene-QYE76_031179, gene-QYE76_036447, gene-QYE76_039846, gene-QYE76_048641, gene-QYE76_060628
Poaceae	Sporobolus alterniflorus	8	Chr02G026660, Chr03G003120, Chr07G005200, Chr09G014280 ... Chr09G014290, Chr15G007640, Chr15G007650, Chr27G016640