Basic Information
Locus ID:
BH09.1111
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH09 | 19580921 | 19596336 | - | BH09.1111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 315,873.63 Da | 44.80 | 75.77 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 1086 | 1125 | 2.30538E-16 | - |
| CDD | cd04301 | NAT_SF | 1269 | 1330 | 0.00464506 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 2644 | 2733 | 1.71673E-29 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 2314 | 2558 | 6.9E-72 | IPR013103 |
| Pfam | PF16135 | Tify domain binding domain | 1008 | 1058 | 5.0E-13 | IPR032308 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 1574 | 1680 | 4.1E-11 | - |
| Pfam | PF00665 | Integrase core domain | 1984 | 2081 | 1.6E-12 | IPR001584 |
| Pfam | PF13976 | GAG-pre-integrase domain | 1922 | 1967 | 2.1E-14 | IPR025724 |
| Pfam | PF00098 | Zinc knuckle | 1737 | 1753 | 4.1E-4 | IPR001878 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1979 | 2137 | 8.09E-43 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 2314 | 2714 | 6.67E-16 | IPR043502 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1064 | 1126 | 3.84E-13 | IPR011011 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 1719 | 1756 | 1.44E-7 | IPR036875 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1254 | 1350 | 5.01E-9 | IPR016181 |
| Gene3D | G3DSA:3.30.420.10 | - | 1975 | 2155 | 2.9E-43 | IPR036397 |
| Gene3D | G3DSA:3.40.630.30 | - | 1252 | 1361 | 9.4E-6 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 1710 | 1768 | 3.0E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1070 | 1182 | 9.5E-15 | IPR013083 |
| SMART | SM00343 | c2hcfinal6 | 1737 | 1753 | 0.0027 | IPR001878 |
| SMART | SM00249 | PHD_3 | 1085 | 1126 | 6.7E-11 | IPR001965 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 1738 | 1753 | 8.845061 | IPR001878 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1083 | 1128 | 9.5345 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1211 | 1375 | 12.841755 | IPR000182 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 1967 | 2143 | 22.19253 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 830 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1390 | 1416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 657 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1439 | 1464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 848 | - | - |
| Coils | Coil | Coil | 891 | 911 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14980.3 | - | 1.46E-117 |
| RefSeq | XP_022683715.1 | uncharacterized protein LOC101768058 isoform X3 [Setaria italica] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 4.67E-196 | |
| TrEMBL | A0A2T7CVB6 | PHD-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G144300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology