halophFGD

Basic Information

Locus ID: BH09.107

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: RING-variant domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH09	2177790	2180886	+	BH09.107

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.95	53,790.21 Da	62.75	81.46	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16495	RING_CH-C4HC3_MARCH	236	284	2.2786E-16	-
Pfam	PF12906	RING-variant domain	236	283	6.1E-12	IPR011016
SUPERFAMILY	SSF57850	RING/U-box	232	286	2.12E-13	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	221	291	2.0E-16	IPR013083
SMART	SM00744	ringv_2	235	284	5.3E-19	IPR011016
ProSiteProfiles	PS51292	Zinc finger RING-CH-type profile.	228	290	19.340805	IPR011016
MobiDBLite	mobidb-lite	consensus disorder prediction	456	474	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	18	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	70	97	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	51	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	19	34	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	442	492	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	70	100	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G60580.1	RING/U-box superfamily protein.	7.61E-100
RefSeq	XP_004974976.1	uncharacterized protein LOC101774528 [Setaria italica]	1.89E-253
TrEMBL	K3Y6X1	RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101774528 PE=4 SV=1	4.28E-252

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg10780, jg12476, jg14949, jg16573, jg27977, jg35873, jg8264
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14242, gene_18689, gene_20856, gene_25413
Amaranthaceae	Atriplex hortensis	4	Ah019856, Ah020603, Ah030312, Ah037779
Amaranthaceae	Beta vulgaris	3	BVRB_7g162270, BVRB_9g203640, BVRB_9g208040
Amaranthaceae	Salicornia bigelovii	10	Sbi_jg14368, Sbi_jg2067, Sbi_jg34449, Sbi_jg36037 ... Sbi_jg36038, Sbi_jg41875, Sbi_jg48252, Sbi_jg51056, Sbi_jg53590, Sbi_jg60131
Amaranthaceae	Salicornia europaea	4	Seu_jg10205, Seu_jg24312, Seu_jg2703, Seu_jg27593
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00003829, GOSA_00005793, GOSA_00012590, GOSA_00024843
Amaranthaceae	Suaeda glauca	14	Sgl00388, Sgl00418, Sgl03877, Sgl04056, Sgl05470, Sgl09120 ... Sgl71207, Sgl74777, Sgl78146, Sgl78568, Sgl79733, Sgl80634, Sgl81050, Sgl82194
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000004473, gene:ENSEOMG00000015540 ... gene:ENSEOMG00000016852, gene:ENSEOMG00000018346, gene:ENSEOMG00000029248, gene:ENSEOMG00000035792, gene:ENSEOMG00000038161, gene:ENSEOMG00000039648, gene:ENSEOMG00000040175, gene:ENSEOMG00000050188, gene:ENSEOMG00000052676, gene:ENSEOMG00000052837, gene:ENSEOMG00000052943
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0015790, CQ.Regalona.r1.7AG0016520 ... CQ.Regalona.r1.7BG0018190, CQ.Regalona.r1.9AG0004930, CQ.Regalona.r1.9BG0018660, CQ.Regalona.r1.9BG0020820
Anacardiaceae	Pistacia vera	5	pistato.v30058720, pistato.v30238350, pistato.v30272400 ... pistato.v30274890, pistato.v30296120
Apiaceae	Apium graveolens	8	Ag1G01930, Ag2G00955, Ag2G02919, Ag3G02054, Ag4G02120 ... Ag6G02232, Ag8G01690, AgUnG00996
Arecaceae	Cocos nucifera	3	COCNU_02G018110, COCNU_07G000090, scaffold000691G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103708403, gene-LOC103711714, gene-LOC103717917 ... gene-LOC103719384
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.3251.V1.1, AsparagusV1_01.836.V1.1 ... AsparagusV1_06.16.V1.1, AsparagusV1_07.1373.V1.1
Asteraceae	Flaveria trinervia	8	Ftri11G06200, Ftri12G08213, Ftri13G33181, Ftri16G12733 ... Ftri17G20593, Ftri2G29946, Ftri3G30855, FtriNA22484
Brassicaceae	Arabidopsis thaliana	5	AT3G06330.1, AT3G09760.1, AT5G03180.2, AT5G18760.1 ... AT5G60580.2
Brassicaceae	Eutrema salsugineum	5	Thhalv10013381m.g.v1.0, Thhalv10013453m.g.v1.0 ... Thhalv10013823m.g.v1.0, Thhalv10020625m.g.v1.0, Thhalv10020737m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp3g05240.v2.2, Sp3g08100.v2.2, Sp6g22150.v2.2 ... Sp6g25620.v2.2, Sp6g39540.v2.2
Brassicaceae	Brassica nigra	10	BniB01g055150.2N, BniB01g057340.2N, BniB02g040320.2N ... BniB02g057190.2N, BniB03g023480.2N, BniB03g024650.2N, BniB05g030790.2N, BniB05g040910.2N, BniB05g045030.2N, BniB07g059730.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq08G1313, Ceq09G1231
Casuarinaceae	Casuarina glauca	2	Cgl08G1340, Cgl09G1322
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g02660, gene.Cymno17g04240
Dunaliellaceae	Dunaliella salina	1	Dusal.1119s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g19390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-566, nbisL1-mrna-8599, nbisL1-mrna-9350
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.1417, evm.TU.LG04.2037, evm.TU.LG09.922 ... evm.TU.LG11.1377
Plantaginaceae	Plantago ovata	5	Pov_00005119, Pov_00014648, Pov_00022479, Pov_00026210 ... Pov_00037157
Plumbaginaceae	Limonium bicolor	4	Lb0G38280, Lb1G00809, Lb4G23122, Lb6G31857
Poaceae	Echinochloa crus-galli	10	AH03.2, AH06.2690, AH09.32, BH06.2484, BH06.2884, BH07.7 ... BH09.107, CH03.4834, CH06.2782, CH09.77
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0098400, gene-QOZ80_4AG0328220 ... gene-QOZ80_4BG0360280
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0100390.1, HORVU.MOREX.r3.6HG0539560.1 ... HORVU.MOREX.r3.7HG0735500.1
Poaceae	Lolium multiflorum	4	gene-QYE76_014077, gene-QYE76_036054, gene-QYE76_038081 ... gene-QYE76_065210
Poaceae	Oryza coarctata	6	Oco03G003140, Oco04G003060, Oco08G000160, Oco11G009660 ... Oco12G009620, Oco12G015420
Poaceae	Oryza sativa	4	LOC_Os02g06920.2, LOC_Os04g01490.1, LOC_Os06g23274.1 ... LOC_Os06g46366.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G000900, gene-BS78_06G004300 ... gene-BS78_10G230000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0104040, Pt_Chr0104042, Pt_Chr0200493, Pt_Chr0305933 ... Pt_Chr0306002, Pt_Chr0401247
Poaceae	Sporobolus alterniflorus	7	Chr02G031840, Chr05G009720, Chr06G036480, Chr10G020250 ... Chr11G002370, Chr25G016780, Chr30G014610
Poaceae	Thinopyrum elongatum	2	Tel2E01G096700, Tel7E01G783000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2BG004710, gene_TRIDC3BG077350 ... gene_TRIDC6AG000370, gene_TRIDC6BG000690, gene_TRIDC7AG064620, gene_TRIDC7BG057700
Poaceae	Triticum aestivum	9	TraesCS2A02G039300.2, TraesCS2B02G051700.1 ... TraesCS2D02G037600.3, TraesCS6A02G001000.1, TraesCS6B02G005200.1, TraesCS6D02G005100.1, TraesCS7A02G463200.1, TraesCS7B02G363900.1, TraesCS7D02G451000.1
Poaceae	Zea mays	3	Zm00001eb224730_P001, Zm00001eb244390_P002 ... Zm00001eb418870_P001
Poaceae	Zoysia japonica	4	nbis-gene-31078, nbis-gene-40562, nbis-gene-46844 ... nbis-gene-52280
Poaceae	Zoysia macrostachya	5	Zma_g12033, Zma_g14780, Zma_g19215, Zma_g30996, Zma_g33251
Portulacaceae	Portulaca oleracea	10	evm.TU.LG02.2740, evm.TU.LG05.1332, evm.TU.LG07.1528 ... evm.TU.LG07.399, evm.TU.LG13.1696, evm.TU.LG13.917, evm.TU.LG15.541, evm.TU.LG21.585, evm.TU.LG21.971, evm.TU.LG23.946
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g05470
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_12_RagTag.358, evm.TU.Scaffold_13_RagTag.712 ... evm.TU.Scaffold_1_RagTag.1568, evm.TU.Scaffold_2_RagTag.865, evm.TU.Scaffold_3_RagTag.528, evm.TU.Scaffold_6_RagTag.651, evm.TU.Scaffold_7_RagTag.1549, evm.TU.Scaffold_8_RagTag.256
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10058, nbisL1-mrna-16036, nbisL1-mrna-24380 ... nbisL1-mrna-24422, nbisL1-mrna-30334, nbisL1-mrna-5273, nbisL1-mrna-5369
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13721, nbisL1-mrna-18803, nbisL1-mrna-21029 ... nbisL1-mrna-8334
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-16093, nbisL1-mrna-17881, nbisL1-mrna-19630 ... nbisL1-mrna-3896, nbisL1-mrna-547, nbisL1-mrna-9979
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000009l.874, evm.TU.utg000011l.391 ... evm.TU.utg000015l.412, evm.TU.utg000016l.552, evm.TU.utg000018l.829, evm.TU.utg000019l.894, evm.TU.utg000027l.356
Rhizophoraceae	Kandelia obovata	6	Maker00003355, Maker00005712, Maker00007585, Maker00015793 ... Maker00016983, Maker00018155
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-12637, nbisL1-mrna-15383, nbisL1-mrna-4331 ... nbisL1-mrna-5631, nbisL1-mrna-7725
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11852, nbisL1-mrna-15084, nbisL1-mrna-328 ... nbisL1-mrna-3391, nbisL1-mrna-5869
Salicaceae	Populus euphratica	7	populus_peu07806, populus_peu10716, populus_peu11703 ... populus_peu26392, populus_peu26625, populus_peu35493, populus_peu37190
Solanaceae	Lycium barbarum	5	gene-LOC132600426, gene-LOC132605963, gene-LOC132616875 ... gene-LOC132626867, gene-LOC132630068
Solanaceae	Solanum chilense	4	SOLCI004152400, SOLCI004229600, SOLCI005706700 ... SOLCI006551000
Solanaceae	Solanum pennellii	5	gene-LOC107003143, gene-LOC107008315, gene-LOC107021113 ... gene-LOC107024015, gene-LOC107029287
Tamaricaceae	Reaumuria soongarica	3	STRG.1226_chr01_+, STRG.4668_chr02_+, gene_4532
Tamaricaceae	Tamarix chinensis	3	TC02G1874, TC07G0688, TC12G1542
Zosteraceae	Zostera marina	2	Zosma03g23850.v3.1, Zosma05g19570.v3.1