Basic Information
Locus ID:
BH08.611
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 6407156 | 6408144 | + | BH08.611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 25,452.52 Da | 59.58 | 97.54 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 29 | 75 | 7.3E-13 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 117 | 200 | 1.12E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 76 | 4.32E-12 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 100 | 214 | 3.9E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 75 | 2.0E-13 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 26 | 74 | 10.795695 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05490.1 | RNI-like superfamily protein. | 7.71E-18 |
| RefSeq | XP_039853258.1 | putative F-box/LRR-repeat protein 9 isoform X1 [Panicum virgatum] | 3.01E-106 |
| Q9M0U6 | Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1 | 7.59E-17 | |
| TrEMBL | A0A3L6PPG5 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM14G04780 PE=4 SV=1 | 9.99E-106 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH08.560, AH08.563, BH08.599, BH08.609, BH08.611, CH06.2084 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0620410, gene-QOZ80_8BG0648220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G076300, gene-BS78_07G093000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G010490 |
| Poaceae | Zea mays | 2 | Zm00001eb386430_P003, Zm00001eb386440_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23738 |