Basic Information
Locus ID:
BH08.609
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 6382221 | 6386237 | + | BH08.609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 51,072.43 Da | 56.49 | 75.66 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 174 | 219 | 1.4E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 160 | 226 | 1.7E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 262 | 441 | 2.88E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 245 | 453 | 2.2E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 173 | 216 | 4.5E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 138 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004974362.1 | putative F-box/LRR-repeat protein 23 [Setaria italica] | 1.08E-107 |
| TrEMBL | A0A368RHT3 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G033400v2 PE=4 SV=1 | 2.44E-106 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH08.560, AH08.563, BH08.599, BH08.609, BH08.611, CH06.2084 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0620410, gene-QOZ80_8BG0648220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G076300, gene-BS78_07G093000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G010490 |
| Poaceae | Zea mays | 2 | Zm00001eb386430_P003, Zm00001eb386440_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23738 |