Basic Information
Locus ID:
BH08.599
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 6286985 | 6288432 | + | BH08.599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 32,091.86 Da | 68.56 | 84.64 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 27 | 74 | 9.8E-10 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 120 | 261 | 9.42E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 86 | 1.96E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 72 | 1.3E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 96 | 277 | 3.1E-9 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 72 | 10.265807 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 280 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039853249.1 | putative F-box/LRR-repeat protein 22 [Panicum virgatum] | 2.66E-138 |
| TrEMBL | A0A8T0R8U7 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG179600 PE=4 SV=1 | 6.02E-137 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH08.560, AH08.563, BH08.599, BH08.609, BH08.611, CH06.2084 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0620410, gene-QOZ80_8BG0648220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G076300, gene-BS78_07G093000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G010490 |
| Poaceae | Zea mays | 2 | Zm00001eb386430_P003, Zm00001eb386440_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23738 |