Basic Information
Locus ID:
BH08.589
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 6133391 | 6142904 | + | BH08.589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 256,412.44 Da | 43.67 | 76.56 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 1183 | 1276 | 2.75177E-15 | - |
| CDD | cd01647 | RT_LTR | 1436 | 1614 | 1.36152E-74 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 1794 | 1850 | 7.8E-8 | IPR002156 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1679 | 1750 | 1.3E-13 | IPR041577 |
| Pfam | PF17921 | Integrase zinc binding domain | 1924 | 1979 | 9.1E-10 | IPR041588 |
| Pfam | PF03732 | Retrotransposon gag protein | 620 | 710 | 4.2E-10 | IPR005162 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1454 | 1612 | 1.8E-19 | IPR000477 |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 41 | 104 | 3.1E-18 | IPR003958 |
| SUPERFAMILY | SSF81383 | F-box domain | 234 | 297 | 2.13E-8 | IPR036047 |
| SUPERFAMILY | SSF47113 | Histone-fold | 28 | 113 | 2.55E-26 | IPR009072 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1394 | 1754 | 3.67E-105 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 1179 | 1281 | 1.36E-10 | IPR021109 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1997 | 2099 | 6.45E-13 | IPR012337 |
| Gene3D | G3DSA:1.10.340.70 | - | 1888 | 1978 | 4.2E-14 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 1160 | 1304 | 1.2E-15 | IPR021109 |
| Gene3D | G3DSA:1.20.1280.50 | - | 242 | 284 | 7.7E-9 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1477 | 1614 | 1.3E-59 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1395 | 1539 | 1.3E-59 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 2041 | 2120 | 3.5E-12 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 1781 | 1855 | 2.1E-9 | IPR036397 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 4 | 119 | 3.7E-35 | IPR009072 |
| Gene3D | G3DSA:3.30.70.270 | - | 1625 | 1718 | 1.8E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 1989 | 2040 | 5.8E-8 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 987 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1119 | 1139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 511 | - | - |
| Coils | Coil | Coil | 976 | 1004 | - | - |
| Coils | Coil | Coil | 1144 | 1164 | - | - |
| Coils | Coil | Coil | 349 | 369 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56170.1 | nuclear factor Y, subunit C2. Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues | 3.21E-38 |
| RefSeq | XP_050222931.1 | uncharacterized protein LOC126673022 [Mercurialis annua] | 5.37E-290 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 | 3.07E-43 | |
| TrEMBL | A0A5B6U2I9 | Reverse transcriptase (RNA-dependent DNA polymerase) domain containing protein OS=Gossypium australe OX=47621 GN=EPI10_034343 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||