Basic Information
Locus ID:
BH08.480
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 4836041 | 4837468 | + | BH08.480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 51,725.32 Da | 73.65 | 76.48 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 428 | 470 | 1.2E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 422 | 473 | 1.41E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 408 | 475 | 2.0E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 429 | 469 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 429 | 470 | 11.176261 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 175 | - | - |
| Coils | Coil | Coil | 354 | 374 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035819143.1 | uncharacterized protein LOC103642511 [Zea mays] | 1.86E-85 |
| TrEMBL | A0A2S3I0K8 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_6G051500 PE=4 SV=1 | 5.2E-172 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology