Basic Information
Locus ID:
BH08.455
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 4593503 | 4595083 | - | BH08.455 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 52,797.40 Da | 48.60 | 94.39 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 365 | 405 | 2.4E-9 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 71 | 1.16E-8 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 128 | 348 | 1.02E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 70 | 392 | 1.9E-10 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 27 | 71 | 10.080346 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42730.1 | F-box family protein. | 1.52E-10 |
| RefSeq | XP_025803484.1 | F-box/FBD/LRR-repeat protein At5g22660-like [Panicum hallii] | 7.13E-218 |
| Q0WR05 | F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana OX=3702 GN=At2g42730 PE=2 SV=1 | 1.5E-9 | |
| TrEMBL | A0A3L6TDF7 | F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM03G25220 PE=4 SV=1 | 5.75E-219 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH08.455 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031948, gene-QYE76_031952 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g18610.1, LOC_Os07g18630.1 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G176800, Tel2E01G180200 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G082700.1, TraesCS2A02G082800.1 ... |