Basic Information
Locus ID:
BH08.43
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 458518 | 461294 | - | BH08.43 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 70,920.01 Da | 43.51 | 87.79 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 41 | 6.0E-5 | IPR001810 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 296 | 501 | 6.7E-23 | IPR000477 |
| SUPERFAMILY | SSF52047 | RNI-like | 192 | 279 | 5.1E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 49 | 6.41E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 49 | 2.8E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 42 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772140.1 | uncharacterized protein LOC120640376 [Panicum virgatum] | 1.76E-72 |
| TrEMBL | A0A1B6PF30 | F-box domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3007G011500 PE=4 SV=1 | 2.21E-70 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.96, BH08.43 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_07G013400, gene-BS78_07G014400 ... |