Basic Information
Locus ID:
BH08.313
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 3047472 | 3048753 | - | BH08.313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 34,185.87 Da | 52.34 | 72.27 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 115 | 299 | 2.7E-28 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 67 | 8.99E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 93 | 8.0E-6 | - |
| SMART | SM00256 | fbox_2 | 25 | 65 | 0.0087 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 8.914593 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56250.1 | phloem protein 2-B14. | 4.22E-22 |
| RefSeq | XP_025822177.1 | F-box protein PP2-B10-like [Panicum hallii] | 2.21E-130 |
| Q9C7K0 | F-box protein VBF OS=Arabidopsis thaliana OX=3702 GN=VBF PE=1 SV=1 | 4.13E-21 | |
| TrEMBL | A0A3L6PSR6 | Phloem-specific lectin OS=Panicum miliaceum OX=4540 GN=C2845_PM14G02640 PE=4 SV=1 | 1.62E-130 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology