Basic Information
Locus ID:
BH08.2530
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 32517698 | 32519219 | + | BH08.2530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 34,414.25 Da | 68.31 | 78.84 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 281 | 323 | 2.03209E-19 | - |
| Pfam | PF13639 | Ring finger domain | 281 | 323 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 280 | 326 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 242 | 327 | 4.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 281 | 322 | 2.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 281 | 323 | 12.445019 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 119 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 2.5E-48 |
| RefSeq | XP_025821145.1 | NEP1-interacting protein-like 1 [Panicum hallii] | 1.52E-88 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 2.41E-47 | |
| TrEMBL | A0A3L6PUG6 | NEP1-interacting protein-like 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM14G21400 PE=4 SV=1 | 2.46E-88 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||