Basic Information
Locus ID:
BH08.2499
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 32235979 | 32238595 | - | BH08.2499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 39,542.29 Da | 47.25 | 67.58 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 294 | 345 | 4.1E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 348 | 1.77E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 265 | 2.22E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 275 | 1.4E-10 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 208 | 363 | 13.74325 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 212 | 260 | 8.742016 | IPR001841 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004974920.1 | probable E3 ubiquitin-protein ligase ARI5 [Setaria italica] | 2.6E-71 |
| TrEMBL | K3YL77 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G246700v2 PE=4 SV=1 | 1.03E-69 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0602s00007.v1.0 |
| Poaceae | Echinochloa crus-galli | 4 | BH08.2499, BH09.577, CH08.2686, CH08.2687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0668950 |