Basic Information
Locus ID:
BH08.2468
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Sodium/hydrogen exchanger family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 31904693 | 31909672 | + | BH08.2468 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 150,513.64 Da | 41.32 | 81.77 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04937 | Protein of unknown function (DUF 659) | 736 | 888 | 4.9E-47 | IPR007021 |
| Pfam | PF00999 | Sodium/hydrogen exchanger family | 37 | 307 | 6.7E-17 | IPR006153 |
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 1117 | 1183 | 4.3E-9 | IPR008906 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 758 | 1185 | 9.86E-48 | IPR012337 |
| Gene3D | G3DSA:1.20.1530.20 | - | 28 | 326 | 6.2E-26 | IPR038770 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 625 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1280 | 1340 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17450.1 | hAT dimerisation domain-containing protein. | 5.91E-68 |
| RefSeq | XP_008649623.2 | uncharacterized protein LOC103630337 [Zea mays] | 0 |
| TrEMBL | A0A8T0T8G3 | BED-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_4NG292738 PE=4 SV=1 | 1.71E-308 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | BH01.4753, BH06.686, BH08.2468, BH08.2472, CH05.2087 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1BG0056120, gene-QOZ80_4BG0351070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_048311, gene-QYE76_055843 |
| Poaceae | Paspalum vaginatum | 15 | gene-BS78_03G023900, gene-BS78_03G199100, gene-BS78_K224500 ... |
| Poaceae | Sporobolus alterniflorus | 11 | Chr03G013220, Chr03G013230, Chr03G013240, Chr05G004880 ... |