Basic Information
Locus ID:
BH08.2467
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 31899807 | 31901595 | - | BH08.2467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 38,503.66 Da | 57.23 | 76.68 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 321 | 363 | 4.66321E-20 | - |
| Pfam | PF13639 | Ring finger domain | 321 | 363 | 2.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 308 | 366 | 7.57E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 277 | 367 | 6.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 362 | 4.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 363 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 169 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35840.1 | RING/U-box superfamily protein. | 4.03E-48 |
| RefSeq | XP_025821145.1 | NEP1-interacting protein-like 1 [Panicum hallii] | 5.08E-97 |
| Q8GT75 | NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2 | 3.89E-47 | |
| TrEMBL | A0A3L6PUG6 | NEP1-interacting protein-like 1 OS=Panicum miliaceum OX=4540 GN=C2845_PM14G21400 PE=4 SV=1 | 8.2E-97 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||