Basic Information
Locus ID:
BH08.2270
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 30232144 | 30236871 | - | BH08.2270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 87,755.51 Da | 49.33 | 77.47 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 219 | 784 | 4.1E-40 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 218 | 786 | 1.24E-63 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 134 | 1.01E-7 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 532 | 789 | 5.3E-32 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 214 | 406 | 2.9E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 145 | 2.0E-9 | IPR013083 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 54 | 135 | 10.601913 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 218 | 787 | 34.609997 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 219 | 234 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 717 | 736 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 616 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 1.12E-29 |
| RefSeq | XP_034600573.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 1.11E-28 | |
| TrEMBL | A0A368RPJ6 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_6G220300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology