Basic Information
Locus ID:
BH08.2269
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 30226203 | 30230415 | - | BH08.2269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 96,372.99 Da | 51.43 | 73.21 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 200 | 873 | 2.3E-36 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 77 | 145 | 1.2E-9 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 145 | 2.12E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 198 | 875 | 2.94E-63 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 187 | 390 | 3.8E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 149 | 1.4E-12 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 624 | 878 | 2.2E-34 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 199 | 876 | 33.136539 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 75 | 146 | 13.477434 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 806 | 825 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 200 | 215 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 2.25E-26 |
| RefSeq | XP_034600891.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 2.24E-25 | |
| TrEMBL | A0A368RPC6 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_6G220200v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology