Basic Information
Locus ID:
BH08.2268
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 30223914 | 30225224 | - | BH08.2268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 45,072.80 Da | 64.79 | 81.35 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 388 | 425 | 1.13625E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 386 | 431 | 3.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 387 | 432 | 7.07E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 370 | 436 | 7.3E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 388 | 425 | 7.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 388 | 426 | 11.589345 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 403 | 412 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 331 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13100.4 | RING/U-box superfamily protein. | 9.73E-24 |
| RefSeq | XP_002444712.1 | polycomb group RING finger protein 6 [Sorghum bicolor] | 7.02E-67 |
| TrEMBL | A0A835A6W1 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_061917 PE=4 SV=1 | 1.02E-71 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology