Basic Information
Locus ID:
BH08.2193
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH08 | 29332067 | 29336262 | + | BH08.2193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 48,285.20 Da | 48.06 | 68.34 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 279 | 353 | 5.9243E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 156 | 230 | 9.9879E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 72 | 142 | 6.0315E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 281 | 347 | 3.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 157 | 227 | 1.5E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 72 | 138 | 1.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 68 | 236 | 3.94E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 266 | 357 | 2.71E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 153 | 3.8E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 254 | 357 | 1.0E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 154 | 247 | 5.3E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 71 | 140 | 4.6E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 280 | 349 | 4.9E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 156 | 229 | 1.6E-22 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 279 | 353 | 15.391531 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 155 | 233 | 16.773018 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 70 | 144 | 15.425642 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 276 | - | - |
| Coils | Coil | Coil | 8 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 8.99E-162 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 1.51E-283 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 4.79E-269 | |
| TrEMBL | A0A3L6Q334 | Oligouridylate-binding protein 1B-like OS=Panicum miliaceum OX=4540 GN=C2845_PM15G17960 PE=4 SV=1 | 3.42E-282 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology